Polymorphisms for ABC00912

Schematic of mutation locations within contig assembly 'ABC00912_1'

(Hover mouse over vertical lines to see details of SNP locations. SNPs are in green, INDELS are in red)

View as SVG diagram



Polymorphic base positions


Positions indicated by red arrows are mapped SNPs.
SNPs detected by primers
Consensus sequence positions 8
7
8
8
9
1
9
3
9
6
9
8
9
9
1
0
0
1
1
3
1
1
7
1
4
8
1
9
3
2
3
5
2
4
1
2
4
7
2
5
9
2
7
4
2
8
9
2
9
2
3
3
5
3
7
8
3
9
1
4
1
2
4
1
4
4
1
7
4
2
0
4
2
1
4
3
0
4
3
4
4
4
8
4
4
9
4
5
4
4
5
5
4
5
8
4
5
9
4
7
0
4
7
4
4
8
3
4
8
9
5
0
9
5
1
0
5
2
6
5
2
9
5
3
1
5
3
7
5
4
8
5
4
9
5
5
4
5
5
5
5
6
3
5
6
8
5
7
8
5
8
9
5
9
0
6
0
1
6
1
0
6
3
5
6
3
8
6
5
2
6
7
8
7
4
4
7
5
2
8
3
1
8
3
9
8
4
1
8
4
7
8
7
7
8
8
3
9
4
0
9
4
2
9
4
7
9
4
8
9
5
2
9
5
3
9
9
9
1
0
0
2
1
0
3
4
Golden Promise |L01R01| L|a_1...............TTgtGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Golden Promise |L01R01| R|a_1GTTGGTTCGACAAAGTTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCC
HS92 |L01R01| R|a_1gg*gGTTCGAcaAAgTTctGCGgaAAAtagGAatgGgCtATCCTTcATATAT*gTAGGAAcAg
HS92 |L01R01| L|a_1...............TTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAACATCAACACAGACATGG
Lina |L01R01| L|a_1................TGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Lina |L01R01| R|a_1GTTGGTTCGACAAAGTTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCc
Morex |L01R01| L|a_1...............TTGTGCGGGGAATAgtAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Morex |L01R01| R|a_1GTTGGTTCGACAAAGTTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCT
OWB D |L01R01| R|a_1CACGACAATGGGGGAGAACACAAACGGGTACGTCAACTCGCTTCAAGCTAGCAGACCATGTc
OWB D |L01R01| L|a_1................AACAcAAACGGGTACGTCAACTCGCTTCAAGCTAGCAGACCATGTCCTTGTTAGACTGCAA
Optic |L01R01| L|a_1...............tTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Optic |L01R01| R|a_1GTTGGTTCGAgAAAGTTGTGCGGgAAATAGTAATGGGCTATCCTTcATATATT*TAGGAgCCT
OWB R |L01R01| R|a_1GTTGGTTCGACAAAGTTGTGCGtgGAATAGTAATGGGCTATCCTTcaTATATTGTagcaGccg
OWB R |L01R01| L|a_1................TGtGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Steptoe |L01R01| L|a_1................TGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCTCAACACAGACATGG
Steptoe |L01R01| R|a_1GTTG*TTCGAGAAAGTTGTGCGGGGAATAGTAATGGGCTATCCTTCATATATTGTAGGAGCCT