Papers & Presentations
Please use the following reference if you are citing Tablet in your work:
- Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F. and Marshall, D. 2010. Tablet - next generation sequence assembly visualization. Bioinformatics 26(3), 401-402.
We have also collated together a list of papers from other authors where Tablet has been mentioned:
- Coucheron, D.H., et al. 2011, Characterization of mitochondrial mRNAs in codfish reveals unique features compared to mammals. Current Genetics 57(3), 213-222.
- Graham, J., et al. 2011, Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. TAG Theoretical and Applied Genetics 13(3), 10.1007/s00122-011-1609-5.
- Hird, S.M., et al. 2011, PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a ‘provisional-reference genome’. Molecular Ecology Resources 11(4), 743-748.
- Hoffman, J.J. 2011, Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome. Molecular Ecology Resources 11(4), 703-710.
- Lajugie, J. and Bouhassira, E.E. 2011, GenPlay, a multipurpose genome analyzer and browser. Bioinformatics 27(14), 1889-1893.
- López-Fernández, H., et al. 2011, PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Research, 10.1093/nar/gkr439.
- Magadan-Mompo, S., et al. 2011, Immunoglobulin heavy chains in medaka (Oryzias latipes). BMC Evolutionary Biology 11, 165.
- Nakamura, K., et al. 2011, Sequence-specific error profile of Illumina sequencers. Nucleic Acids Research, gkr344v1-gkr344.
- Pedersen, B., et al. 2011, Gobe: an interactive, web-based tool for comparative genomic visualization. Bioinformatics 27(7), 1015-1016.
- Robinson, J.T., et al. 2011, Integrative genomics viewer. Nature Biotechnology 29(1), 24-26.
- Schellenberg, J.J., et al. 2011, Molecular Definition of Vaginal Microbiota in East African Commercial Sex Workers. Applied and Environmental Microbiology 77(12), 4066-4074.
- Son, M.S. and Taylor, R.K. 2011, Preparing DNA libraries for multiplexed paired-end deep sequencing for Illumina GA sequencers. Current Protocols in Microbiology (suppl.20), art. no. 1E.4
- Straub, S.C.K., et al. 2011, Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. BMC Genomics 12, 211.
- Bonfield, J.K. and Whitwham, A. 2010, Gap5 - editing the billion fragment sequence assembly. Bioinformatics 26(14), 1699-1703.
- Cirulli, E.T., et al. 2010, Uncovering the roles of rare variants in common disease through whole-genome sequencing. Nature Reviews Genetics 11(6), 415-425.
- Costa, V., et al. 2010, Uncovering the Complexity of Transcriptomes with RNA-Seq. Journal of Biomedicine and Biotechnology, art. no. 853916.
- Fiume, M., et al. 2010, Savant: genome browser for high-throughput sequencing data. Bioinformatics 26(16), 1938-1944.
- Hou, H., et al. 2010, MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation. Nucleic Acids Research 38(suppl_2), W732-W736.
- Jerlström-Hultqvist, J., et al. 2010, Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate. BMC Genomics 11(1), art. no. 543.
- Kimbrel, J.A., et al. 2010, An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. BMC Genomics 11(1), art. no. 522.
- Kumar, S. and Blaxter, M. 2010, Comparing de novo assemblers for 454 transcriptome data. BMC Genomics 11(1), art. no. 571.
- Li, H. and Homer, N. 2010, A survey of sequence alignment algorithms for next-generation sequencing. Briefings in Bioinformatics 11(5), 473-483.
- Magi, A., et al. 2010, Bioinformatics for next generation sequencing data. Genes 1(2), 294-307.
- Parkin, I.A.P., et al. 2010, Towards unambiguous transcript mapping in the allotetraploid Brassica napus. Genome 53(11), 929-938.
- Paszkiewicz, K. and Studholme, D.J. 2010, De novo assembly of short sequence reads. Briefings in Bioinformatics 11(5), 457-472.
- Thakur, V. and Varshney, R.K. 2010, Challenges and strategies for Next Generation Sequencing (NGS) data analysis. Journal of Computer Science and Systems Biology 3(2), 40-42.
- Timmermans, M.J.T.N., et al. 2010, Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics. Nucleic Acids Research 38(21), e197.
- Zhang, Z., et al. 2010, ZOOM Lite: next-generation sequencing data mapping and visualization software. Nucleic Acids Research 38(suppl.2), W743-W748.